Version 1.02 * Fixed bug in parsing of unsigned integer tags that caused some tags to be treated as signed integer. Version 1.01 * Fixed Build.PL to pick up correct location of bam header files. * Eliminated several memory leaks that manifested when reading BAM files with lots of targets. * Made -fasta argument optional when using high-level interface. Version 1.00 * initial release Tue Jun 23 23:47:28 BST 2009 * Many documentation improvements * Improved performance of high-level interface for fetch() and pileup() functions. * Added information to README about how to compile with samtools 0.1.4 Thu May 7 09:47:02 EDT 2009 * See t/01sam.t for a demonstration of the API. * Essentially all of the API is fleshed out, with the exception of the ability to generate padded alignment itself. * The $alignment->query() interface is the one to use for retrieving start, end and sequence of the query sequence. The $alignment->target() interface flips the meaning of start and end when the alignment is reversed, to accomodate old AceDB/GFF2 scripts.