RPS-BLAST 2.2.18 [Mar-02-2008]

Database: CDD.v.2.13 
           24,083 sequences; 5,982,884 total letters

Searching..................................................done

Query= lcl|YP_134044.1|Plus1 F 4437 4742 NC_006391 hypothetical
protein {Haloarcula marismortui ATCC 43049}
         (101 letters)

 ***** No hits found ******


Query= lcl|YP_134045.1|Plus1 F 4742 5065 NC_006391 transcription
regulator {Haloarcula marismortui ATCC 43049}
         (107 letters)

 ***** No hits found ******


Query= lcl|YP_134046.1|Plus1 F 5275 5808 NC_006391 hypothetical
protein {Haloarcula marismortui ATCC 43049}
         (177 letters)

 ***** No hits found ******


  Database: CDD.v.2.13
    Posted date:  Nov 8, 2007  6:30 PM
  Number of letters in database: 5,982,884
  Number of sequences in database:  24,083
  
Lambda     K      H
   0.308    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24083
Number of Hits to DB: 200,397,591
Number of extensions: 14170162
Number of successful extensions: 17150
Number of sequences better than 1.0e-005: 6
Number of HSP's gapped: 17124
Number of HSP's successfully gapped: 29
Length of database: 5,982,884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.7 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 102 (43.3 bits)