GeneMark.hmm (Version 2.2a) Sequence name: Hvrn.contig8 Sequence length: 50124 bp G+C content: 44.82% Matrices file: /home/software/analysis/gene-prediction/genemark/matdir/osativa.mtx (Oryza sativa) Thu Mar 22 10:25:00 2001 Predicted genes/exons Gene Exon Strand Exon Exon Range Exon Start/End # # Type Length Frame 1 1 - Initial 1805 2176 372 3 1 2 5 - Terminal 3108 3229 122 3 2 2 4 - Internal 3869 4501 633 1 2 2 3 - Internal 4820 4888 69 1 2 2 2 - Internal 4981 5061 81 1 2 2 1 - Initial 5296 5656 361 1 1 3 2 - Terminal 7171 7288 118 3 3 3 1 - Initial 7540 7787 248 2 1 4 1 + Single 15431 15757 327 1 3 5 1 + Initial 17526 17696 171 1 3 5 2 + Internal 17772 17887 116 1 2 5 3 + Internal 18005 18074 70 3 3 5 4 + Internal 18456 18539 84 1 3 5 5 + Internal 18628 18714 87 1 3 5 6 + Internal 18807 18870 64 1 1 5 7 + Internal 19944 20038 95 2 3 5 8 + Internal 20139 20293 155 1 2 5 9 + Terminal 20779 20788 10 3 3 6 5 - Terminal 23000 23061 62 3 2 6 4 - Internal 23397 24101 705 1 2 6 3 - Internal 24708 24821 114 1 2 6 2 - Internal 25079 25356 278 1 3 6 1 - Initial 26970 26977 8 2 1 7 3 - Terminal 34218 34310 93 3 1 7 2 - Internal 35900 36301 402 3 1 7 1 - Initial 36392 36448 57 3 1 8 1 + Initial 36531 37064 534 1 3 8 2 + Terminal 37153 37161 9 1 3 9 3 - Terminal 37880 37917 38 3 2 9 2 - Internal 38938 39006 69 1 2 9 1 - Initial 39080 40214 1135 1 1 10 2 - Terminal 41091 41554 464 3 2 10 1 - Initial 41635 41713 79 1 1 11 1 - Single 41744 42061 318 3 1 12 1 + Initial 42171 42212 42 1 3 12 2 + Terminal 42432 42824 393 1 3 13 7 - Terminal 43798 43932 135 3 1 13 6 - Internal 44220 44297 78 3 1 13 5 - Internal 47595 47685 91 3 3 13 4 - Internal 48393 48526 134 2 1 13 3 - Internal 48643 49024 382 3 3 13 2 - Internal 49118 49149 32 2 1 13 1 - Initial 49457 49507 51 3 1 Predicted gene sequence(s): >Hvrn.contig8|GeneMark.hmm|gene 1|124_aa MEVAVKGYADASFDTDPDDSKSQTGYVFILNGGAVSWCSSKQSVVADSRCEAEYMAALEA AKEGVWMKQFMTDLGVVSSALDPLTLLCDNTRAIALAKEPRFHNKTRHIKRRFNLIRDYV EGED >Hvrn.contig8|GeneMark.hmm|gene 2|421_aa MAHAKVTLNFNTFLEKAKLKDDGSNFVDWARNLKLLLQAGKKDYVLNVALGDEPPAAADQ DAKNAWLACKEDYSVVQCAVLYGLEPGLQRCFERHGAYEMFQELKFIFQKNARIERYETS ESELRKEHQVLMVNKATSFKRSGKGKKGYGSLEAQLSKYLAGKKAAKEKSENNGCSISMS NIFYGHAPNVRGLFILNLDSDNTHIHNIETKRVRVNNDSAMFLWHCRLGHIGVKRMKKLH TDGLLESLDFDSLDTCEPCLMGKMTKTPFSGTMERASDLLEIIHTDVCGPMSAEARGGYR YFLTFIDDLSRYGYVYLMKHKSETFEKFKQFQSEVENHRNKKIKFLRSDHGGEYLSFEFG AHLRQCGIVSQLTPLGTPQRNEAMVGPDSNKWLEAMKSEIGSMYGNKVWTLEVLPEGRKA I >Hvrn.contig8|GeneMark.hmm|gene 3|121_aa MVRRQRLIYRMTSFDYRKVFGHYRECTESDEWVPNVHREGPTHPGKPIGPRGGAPALGGL VGQPKRALCAKDRKSKRKKKRKRSRYFTTTGAPSRCRRTHLLIRLACWIKKAEIIIELYV C >Hvrn.contig8|GeneMark.hmm|gene 4|108_aa MFTTPKAGGGMYLCLSVGWGIVGRRRVMSGCGQGSEMGLVGLRTRRHWAKTGRGGAAGGA ASIGDGPRRAADKATLGEDGPGRGVGRGGVGRRRVASGGGDREEDEWS >Hvrn.contig8|GeneMark.hmm|gene 5|283_aa MDAAVQEAKLLRQVNALIVAHLRDQNLTQAAAAVAAATMTPKADASLPNHLLRLVAKGLA AEREEAARGGGAPPAFDSAGGGGLARPLGTSAVDFSVQNVRGPSKTFPKHETRHISDHKN VARCAKFSPDGKHFATGSGDTSIKFFEVSKIKQTMLGDSKEGPGRPVVRTFYDHVQLLTQ LLVHSTDKVSSFVTNIPGTDHPVAHLYDVNTFTCFLSANPQDSSAAINQVRYSGTGSMYV TASKDGSLRIWDGVSAECVRPIIGAHGSVEATSAIFTKDESGF >Hvrn.contig8|GeneMark.hmm|gene 6|388_aa MGSVVFLEGSEGNLQALKDTLQAYQVASAQKVNLQKSSILDGKGCRDEDKGTLKQTIGID SEALSERYSGLPTVVGRLKDGSFEYVRERSKGKVSGSVGKASVALQFPSSLCARVLKARY FKECTIMNTTCPNAMFWKVLSSEKWVPVAIPPVSEGPHGELASWLLRWFAEVGDPERELM VHAVYGLWLARNEARDGKRIVDPRVVEENVYQHIIEWNAIHMKKPRSTTPTLAVRWSPPE QGWLKANSDGALAKLRDRGGGGVVLRDHDGAYRGGACYVFRDVSDPEVVEILACRKAVHL AVQTGATRVHVEVDSKGMAAMLNDQAKNLSAAGPIVEEIKLLGRTLQGFIVSRVRRSGNH GAHLLAREVRSVYTHVILKQPLFDTCRL >Hvrn.contig8|GeneMark.hmm|gene 7|183_aa MVLTEKEAKGFVFSGPVEEAWGLHHDAQFRDLGNNLFLVHFGGEGDWKHSRNNGPWQFDF MILKGYDGKTRPSEMVFDSVEAWVRVEDLPLDRRTREFGEALGNWLGEVVKVDVERDGFA KGKYLRVRAKIFVYEPVVRYFNLKESVDDEVETAEGQAGPLEAEAEARRGASVSAHSFGR WGK >Hvrn.contig8|GeneMark.hmm|gene 8|180_aa MASTVSPWSETPQDILGLVIDRLHSSPDHEEPRLSAAWSRFLLAVPVAAANRRGFQRARR TRHSAAADRARFRAVCRSWHLAMRQHVSTPRVLPWIILSDGYFFTPSDNGCRAPRRLPSL PKNARCIGSTDGWLALDCTDARNVHTYLLHNPFSDTTVPLPELDPIIANVSEFFAVRKAA >Hvrn.contig8|GeneMark.hmm|gene 9|413_aa MPLKFWDETFSTAVYLINRVPSRVIHNQTPLERLFGLTPNYTFLRIFGCAVWPNLRPFNK HKLEYRSKQCVFIGYNYLHKGYKCLDVSTGRVYVSQDVIFDEHIFPFASLHPNAGAQLRA ELVLLPPTLLNLSSPLTPSAAPNDPMAISTIYAPTSANSVQDSAGISHDFMQPNVSTDLV ATENPGLHASESATAAPGAGDPPLQASGSAAAAPGSSPGFVHQPAASVGRSPASTSDPAR QPDASAARPPVSDPVRPTTVATALFPASDLVRSPQEIRLQRRAPPTAPWIGRGLPRVVGP PCLLPWTREISLDVVTRYRLLRLRPMQRRRCPMQRPPRLLFLLVCHLIRYLLTLRCPVVS STICNPCNQHLHPLGLILGEPENLKEAIADPKWKAAMDEEFDWAGCPDDRRST >Hvrn.contig8|GeneMark.hmm|gene 10|180_aa MAAAGKPLDDDELVSYILQGLDSDYNPEARIDAQNGSNTNSFSINLASKGGSRNNNDTRP SGPGGGNPAAYRGAGGGFFPNTLVAPPPSGGRDETCQICKRQGHATWHCFKRYDKNFNPP PKRQGGGGGNNSGGGGNSSGGNTKSANTVPAAYDVDTNWYLDTGAMDHVTGELEKLAMHD >Hvrn.contig8|GeneMark.hmm|gene 11|105_aa MGYLDGTMAEPPAVLTTETDVAGKKEISSTPNPAHVLWYTQDQQVLTFLLASLSRDVLLQ VHSLASATGVWTAIQQMFASHSRARHIQLRGQLGNTKKGDSPVAI >Hvrn.contig8|GeneMark.hmm|gene 12|144_aa MVELEEEDDMSMEEVALMTNNSNYLIILIRPGKGVWLPKPDTAPFNLFIDIVFLQGKLYG ITQAEDLASVSIDFDDCGMPTVTTVERLIKHPPLESCEFDVWSDAGEKLEADGDMGDEDQ VENGGEDHDEALNEVDARIQKENR >Hvrn.contig8|GeneMark.hmm|gene 13|300_aa MSTATSLWDKAALMMREELAVAAVVAGCLDMTKLYVVGAGMFSCVTVALYPVSVIKTRMQ VASGEAMRRNALATFKNILKVDGVPGLYRGFGTVITGAIPARIIFLTALEKTKATSLKLV EPLQLSESMEAALANGLGGLTASLCSQAVFVPIDVVSQKLMVQGYSGHVRYKGGIDVVQK IMKADGPRGLYRGFGLSVMTALGRLDDKEDTPSQLKIVGVQATGGMVAGATSLEDNPLSD NVPQFAETSSAGSPLEKERVRQRASATISVTRDCQCSRRPTIGGVRQLGRSLPMRRDGAT