BLASTP 2.0MP-WashU [12-Feb-2001] [linux-i686 01:36:08 31-Jan-2001] Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2000) http://blast.wustl.edu Query= gi|1786183|gb|AAC73113.1| (AE000111) aspartokinase I, homoserine dehydrogenase I [Escherichia coli] (820 letters) Database: ecoli.aa 4289 sequences; 1,358,990 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb|AAC73113.1| (AE000111) aspartokinase I, homoserine deh... 4141 0.0 1 gb|AAC76922.1| (AE000468) aspartokinase II and homoserine... 844 3.1e-86 1 gb|AAC76994.1| (AE000475) aspartokinase III, lysine sensi... 483 2.8e-47 1 gb|AAC73282.1| (AE000126) uridylate kinase [Escherichia c... 97 0.0010 1 >gb|AAC73113.1| (AE000111) aspartokinase I, homoserine dehydrogenase I [Escherichia coli] Length = 820 Score = 4141 (1462.8 bits), Expect = 0.0, P = 0.0 Identities = 820/820 (100%), Positives = 820/820 (100%) Query: 1 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA 60 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA Sbjct: 1 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA 60 Query: 61 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA 120 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA Sbjct: 61 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA 120 Query: 121 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP 180 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP Sbjct: 121 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP 180 Query: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV Sbjct: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD Sbjct: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 Query: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF Sbjct: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 Query: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL 420 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL Sbjct: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL 420 Query: 421 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL 480 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL Sbjct: 421 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL 480 Query: 481 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL 540 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL Sbjct: 481 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL 540 Query: 541 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR 600 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR Sbjct: 541 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR 600 Query: 601 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA 660 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA Sbjct: 601 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA 660 Query: 661 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA 720 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA Sbjct: 661 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA 720 Query: 721 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF 780 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF Sbjct: 721 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF 780 Query: 781 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 820 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV Sbjct: 781 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 820 >gb|AAC76922.1| (AE000468) aspartokinase II and homoserine dehydrogenase II [Escherichia coli] Length = 810 Score = 844 (302.2 bits), Expect = 3.1e-86, P = 3.1e-86 Identities = 222/705 (31%), Positives = 356/705 (50%) Query: 116 DSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIA 175 D++ A ++ GE S +M+ VL +G +D E L A + VD S + Sbjct: 119 DAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE-RAAQPQVDEGLSYPLLQ 177 Query: 176 ASRI--PADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVY 233 + P +V+ GF + N GE V+LGRNGSDYSA + A IW+DV GVY Sbjct: 178 QLLVQHPGKRLVV-TGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVY 236 Query: 234 TCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGT 293 + DPR+V DA LL + EA EL+ A VLH RT+ P++ +I ++ + P T Sbjct: 237 SADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGST 296 Query: 294 LIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSS 353 I + +++ +++ + P + + + RA++ + + + Sbjct: 297 RIERVLASGT-GARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHN 355 Query: 354 SEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGIS 413 + FC A + + E GL L + + LA++++VG G+ T + Sbjct: 356 DRQLLQFCYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGV-TRNPLH 407 Query: 414 A-KFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIG 472 +F+ L + Q S+ V+ + ++ HQ +F ++ I + + G Sbjct: 408 CHRFWQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFG 465 Query: 473 VGGVGGALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQ 527 G +G LE R+QS L + + + GV +S+ L + GL+ L + +E + Sbjct: 466 KGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVE 525 Query: 528 AKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMD 587 E L ++ + + V++D T+SQ +ADQY DF GFHV++ NK A S + Sbjct: 526 QDEE----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSN 581 Query: 588 YYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKL 647 Y Q+ A EK+ R +LY+ VGAGLP+ +++L+++GD ++ SGI SG+LS++F + Sbjct: 582 KYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQF 641 Query: 648 DEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPA 707 D + F+E A + G TEPDPRDDLSG DV RKL+ILARE G +E + +E ++PA Sbjct: 642 DGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPA 701 Query: 708 EFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDP 767 G + F N +L++ R+ AR+ G VLRYV D +G RV + V + P Sbjct: 702 HCEG-GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHP 760 Query: 768 LFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812 L + +N A S +Y+ PLV+RG GAG DVTA + +D+ R Sbjct: 761 LASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805 Score = 321 (118.1 bits), Expect = 3.6e-27, P = 3.6e-27 Identities = 108/406 (26%), Positives = 191/406 (47%) Query: 5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64 KFGG+S+A+ + +LRVA I+ ++ + V+SA TN L+ ++ + + + + + Sbjct: 16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74 Query: 65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLH-GISLLGQCPDSINAAL 122 R + +L++GL A+ L + FV + ++ +L GI+ D++ A + Sbjct: 75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVS-DLERLAALLDSGIN------DAVYAEV 125 Query: 123 ICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRI--P 180 + GE S +M+ VL +G +D E L A + VD S + + P Sbjct: 126 VGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE-RAAQPQVDEGLSYPLLQQLLVQHP 184 Query: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 +V+ GF + N GE V+LGRNGSDYSA + A IW+DV GVY+ DPR+V Sbjct: 185 GKRLVV-TGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243 Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 DA LL + EA EL+ A VLH RT+ P++ +I ++ + P T I Sbjct: 244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLA 303 Query: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 + +++ +++ + P + + + RA++ + + + + F Sbjct: 304 SGT-GARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLLQF 362 Query: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGM 406 C A + + E GL L + + LA++++VG G+ Sbjct: 363 CYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGV 401 >gb|AAC76994.1| (AE000475) aspartokinase III, lysine sensitive [Escherichia coli] Length = 449 Score = 483 (175.1 bits), Expect = 2.8e-47, P = 2.8e-47 Identities = 149/467 (31%), Positives = 233/467 (49%) Query: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQ---- 58 V KFGGTSVA+ + R ADI+ S+A V VLSA A ITN LVA+ E G+ Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVRLV--VLSASAGITNLLVALAEGLEPGERFEK 63 Query: 59 -DALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDS 117 DA+ NI FA +L L +P ++ +++ I VL + L P + Sbjct: 64 LDAIRNIQ-----FA-ILERLR-----YPNV-IREEIERLLENIT-VLAEAAALATSP-A 109 Query: 118 INAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVG-HYLESTVDIAESTRRIAA 176 + L+ GE MS + +L R D V K++ + + DIA A Sbjct: 110 LTDELVSHGELMSTLLFVEILRERDVQAQWFD-VRKVMRTNDRFGRAEPDIAALAELAAL 168 Query: 177 SRIPA--DHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYT 234 +P + +V+ GF KG LGR GSDY+AA+LA L A +IWTDV G+YT Sbjct: 169 QLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYT 228 Query: 235 CDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTL 294 DPR V A+ + +++ EA E++ FGAKVLHP T+ P + IP + ++ +P+A GTL Sbjct: 229 TDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTL 288 Query: 295 IGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSS 354 + ++ E+ + ++ N + ++ M G A VF ++R ISV LIT +S Sbjct: 289 V-CNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TS 345 Query: 355 EYSISFCVPQSDCVRA-ERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGIS 413 E S++ + + + + + +EL L + V E LA+++++G+ + G+ Sbjct: 346 EVSVALTLDTTGSTSTGDTLLTQSLLMELSA--LCRVEVEEGLALVALIGNDLSKACGVG 403 Query: 414 AKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLF 460 + F L NI + I G+S ++ +V +DA V+ H LF Sbjct: 404 KEVFGVLEPFNIRM--ICYGASSHNLCFLVPGEDAEQVVQKLHSNLF 448 >gb|AAC73282.1| (AE000126) uridylate kinase [Escherichia coli] Length = 241 Score = 97 (39.2 bits), Expect = 0.0010, P = 0.0010 Identities = 30/98 (30%), Positives = 45/98 (45%) Query: 199 LVVLGRN-GSDYSAAVLAACLR-----ADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQ 252 +V+L G+ + AACLR AD T VDGV+T DP + P A + + ++Y Sbjct: 131 VVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPTATMYEQLTYS 190 Query: 253 EAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQA 290 E +E KV+ T ++P + N P A Sbjct: 191 EVLEKEL---KVMDLAAFTLARDHKLPIRVFNMNKPGA 225 Parameters: E=0.01 ctxfactor=1.00 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.319 0.136 0.384 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 820 820 0.010 93 3 11 22 0.19 34 37 0.22 37 Statistics: Database: /home/jes12/db/ecoli.aa Title: ecoli.aa Posted: 2:52:35 PM EST Nov 18, 2001 Created: 9:46:47 AM EST Nov 18, 2001 Format: XDF-1 # of letters in database: 1,358,990 # of sequences in database: 4289 # of database sequences satisfying E: 4 No. of states in DFA: 573 (61 KB) Total size of DFA: 281 KB (1149 KB) Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 1 Search cpu time: 1.58u 0.00s 1.58t Elapsed: 00:00:01 Total cpu time: 1.59u 0.02s 1.61t Elapsed: 00:00:01 Start: Thu Dec 6 11:09:14 2001 End: Thu Dec 6 11:09:15 2001